Table1 : Summary of single-cell multi-omics technologies in recent years
Method |
Technology |
Data types provided |
Resolution |
References |
Co-detection and sequencing of genes and transcripts |
Microchannel-based microfluidics |
DNA, mRNA sequence |
Single cell |
[24] |
G&T-seq |
Plate-based sequencing |
DNA, mRNA |
Single cell |
[25] |
smart-seq2 |
Plate-based sequencing |
DNA, mRNA |
Single cell |
[16] |
DR-seq |
Mouth-pipetting sequencing |
DNA, mRNA |
Single cell |
[26] |
SIDR-seq |
Microplate-based sequencing |
DNA, mRNA |
Single cell |
[27] |
TARGET-seq |
Plate-based sequencing |
Genomic and coding DNA, mRNA |
Single cell |
[28] |
Perturb-seq |
Droplet-based microfluidics sequencing |
sgRNA, mRNA |
Single cell |
[72] |
scM&T-seq |
Bead-based sequencing |
DNA methylation, mRNA |
Single cell |
[31] |
scMT-seq |
Micro-pipetting sequencing |
DNA methylation, mRNA |
Single cell |
[32] |
scTrio-seq |
Pipette cell-picking sequencing |
DNA, RNA, DNA methylation |
Single cell |
[33] |
scNOME-seq |
Plate-based sequencing |
DNA methylation, chromatin accessibility |
Single cell |
[35] |
scNMT-seq |
Plate-based sequencing |
Chromatin accessibility; DNA methylation; transcriptome |
Single cell |
[36] |
scNOMeRe-seq |
Plate-based sequencing |
Chromatin accessibility; DNA methylation; transcriptome |
Single cell |
[37] |
ScCOOL-seq |
Plate-based sequencing |
Chromatin status, nucleosome, positioning, DNA , methylation, copy number variation (CNV) and ploidy |
Single cell |
[38] |
scCUT&Tag pro |
Droplet-based microfluidics sequencing |
Histone modifications, proteins |
Single cell |
[43] |
PLAYR |
Mass cytometry |
mRNA, protein |
Single cell |
[44] |
CITE-seq |
Droplet-based microfluidics sequencing |
mRNA, protein |
Single cell |
[45] |
REAP-seq |
Droplet-based microfluidics sequencing |
mRNA, protein |
Single cell |
[46] |
DBiT-seq |
Microchannel-based microfluidics |
mRNA, protein |
Spatial, 10–50 μm |
[49] |
Slide-Seq |
Microarray-based sequencing |
mRNA |
Spatial, 10 μm |
[50] |
Slide-seqV2 |
Microarray-based sequencing |
mRNA |
Spatial, 10 μm |
[51] |